PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087691.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 732aa    MW: 79228.6 Da    PI: 6.5061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07310330526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_011087691.1 310 PCPDFRK-GACRRGDMCEYAHG 330
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.17E-1734164IPR020683Ankyrin repeat-containing domain
CDDcd002041.22E-1437163No hitNo description
Gene3DG3DSA:1.25.40.205.7E-1837168IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-1181154IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.85785161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1585115IPR002110Ankyrin repeat
PRINTSPR014151.1E-586101IPR002110Ankyrin repeat
SMARTSM002483.9E-5120152IPR002110Ankyrin repeat
PROSITE profilePS5008812.342120155IPR002110Ankyrin repeat
PRINTSPR014151.1E-5139153IPR002110Ankyrin repeat
SMARTSM003564.0E-6305331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4309332IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5310330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582310332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4338368IPR000571Zinc finger, CCCH-type
SMARTSM0035664340363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MCSGPERSNS NSSTTQGAAD KKTNNMKDLN NLSVETEDSF SSLLEYAANN DIEAFKRSIE  60
LDLSAVDEAG LWYVRKKGLK QITQEERTPL MLAATYGSID VLKLIVALPE VDLNRSCGKD  120
KWTALHCAAS GGSMNAFEVV KLLLSAGADP NIEDVTGRRP VDVLVIPPKL PGAKAALEDL  180
LINNSSDGSV GACNLRVSLS SSNASSPVLS SSPESGSPCS PSDSASSPTA PKFSDTAVNS  240
VSEKKQYPVD PSLPDIRNSI YSTDEFRMFS FKVRPCSRAY SHDWTECPFV HPGENARRRD  300
PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT SCARQVCFFA  360
HTQDELRPLY VSTGSGVPSP RSAASAASFM DMAAALSLLP GSPTSQSVMS PSAFNQTMSP  420
SANGISHSPA AWPQPNVPTL HLPGSNLQSS RLRSSLSARD IPPEDLNVLR DYDAQQLVMN  480
DLACFSQPRP SSAMLNCAGR SKTTLTPSNL EELFSAEIAS SPRYSDQAAA FGVFSPSHKS  540
AVLNQFQQQQ NILPPINTNV FSPRNVEHPL LQASLGVSSP RMSPRSMEPG SPMSARLSAF  600
AQRERQQQHM RSLSSRDLGS NRVPVVGSPT TTWSKWGSPN GKVDWSVSGE DQGHLKRSSS  660
FELKNDGEEP DLSWVQSLVK ESPPEMTDKP AAPVSGAAPS GECLKSNSQT DSIDHSVLGA  720
WLEQMQLDQL VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087691.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain